Pretty much all the aircraft on the Midway Air Station got off the ground prior to the arrival of the Japanese air raid. To the best of my knowledge, they almost all, like all but one, did.
The station CO, Cyril Simard's, after action report lists all the damage to facilities on the station, but lists no aircraft as damaged or destroyed. Same with the MAG-22 report from Ira Kimes.
The report from the station's Air Officer, Logan Ramsey, gives us more to chew on. He specifically notes that all aircraft on the station were in the air when the Japanese arrived except for a single J2F utility craft, a small single engine seaplane . . . a biplane . . . it was destroyed on the ground, this noted in the last sentence of the last page of his report: "One J2F was destroyed on the ground."
My guess, since it does not show up in the inventories of any of the VP squadrons, the PatWing command elements (nor the ComPatWing2 action report for that matter), or MAG-22, this J2F as probably the station "hack," that is, a utility aircraft assigned to the station.
There was a decoy aircraft which, since it was not real, was left out in plain view as a bullet magnet. It was jokingly designated a JFU which stood for Jap-Fouler-Upper. I've only seen reference to same anecdotally; not a clue as to its fate. It may, in fact, have been the J2F mentioned above were it a hangar queen.
Most, if not all, of the photos one sees of damaged aircraft on the station are those that made it back in shot-up condition . . . Bert Earnest's TBF comes to mind.